PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM63315.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 268aa MW: 30023.8 Da PI: 7.1838

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM63315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lvd+v+ +G g W I+r g++R++k+c++rw++yl OWM63315.1 14 RGAWTAMEDKILVDYVAAHGEGKWGNIPRVSGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54	3.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l OWM63315.1 67 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 112 7899****************.*****.**********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MGRAPCCPKE GLNRGAWTAM EDKILVDYVA AHGEGKWGNI PRVSGLRRCG KSCRLRWLNY 60 LRPDIKRGNI SPEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT VLKKKLKSKE 120 QSKGDSGRDK SSQTTKLMPS KNSNVGNSIV RQLKPARTAR TVSTAPSSEP QNDVYRVIDY 180 RPGCPELSTE GDNGAKPGGG SLATTASEEE NELENLAMDF EFLASDFSES EFWKLCQLES 240 DDIDQQPLLF SEELLKSWTD DGCFQLQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-59	MYB family protein