PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63320.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 309aa    MW: 34672.7 Da    PI: 7.7243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l  +++ +G g W+  +++ g++R++k+c++rw++yl
       OWM63320.1 14 RGAWTAMEDKILTAYIRAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.16.1e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
       OWM63320.1  67 RGNISRDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      788999****************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGRSPCCSKE GLNRGAWTAM EDKILTAYIR AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SRDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAKPSA  120
HSPTSPSSPK GKARSLVSPY HPTEPPASTP AAKATRPQAV RAQATRCTMA ADLVTSNTNP  180
PFDVRHRVDP NSQNERCIDQ YAQDLEIPRI HHITDRQDVQ ENCSTDFDFS NFGCGDDRVQ  240
ASNDDGGEKG NYFGNYYNSH MSMELAILED WAGKSGDVDD TGVSVEVVKD TFDIESLTFL  300
FDSEQWTCP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-60MYB family protein