PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM63396.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 579aa MW: 63909.5 Da PI: 8.8142

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM63396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OWM63396.1 90 FICEICSKGFQRDQNLQLHRRGH 112 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MMMNNGVLSN LMSSNSCEVS ASSSSNGSRS NNNSNSNNKD NSNVESGTRS HQPFASATQA 60 LAPPKKRGHP DPDAEVIALS PKSLLATNRF ICEICSKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RSSKDVVKKK VYVCPEPTCI HHDLSRALGD LTGIKKHFCR KHGEKKWKCE KCTKRYAVHS 180 DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ENSSSSTLFS PKNLLSSPIN 240 SLQHLSTPYN LHPHAFSIKT EPENLHHHLF NPTQQELLLP STSIFDPSLI SQTNPNPTLF 300 QSSVTASSAP PHMSATALLQ RADQMGVTMR KPSAISPSPL MPPRHASSGD HHDVSESTTT 360 VAGSTGMVSS SCGEDRFMAG PGGSFFPLLG LETFWNEAAA LASTTATAAN NTVISLAAAD 420 EVRLPHWGMD QGTKDSGVPS TPHNRHLDHN QIMVMMNARN TVPSSKARLP GSYLSSSFNN 480 NESIMMRGIM NTLEEDNHFN SDLMEKEMES HSLIRRSDQG MTRDFLGLRA FSSVPGDLVK 540 VPRFDPMNSS SSSSSNYNYS NNKYGQQNKD QYQSLWQNN

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MMMNNGVLSN LMSSNSCEVS ASSSSNGSRS NNNSNSNNKD NSNVESGTRS HQPFASATQA  60
LAPPKKRGHP DPDAEVIALS PKSLLATNRF ICEICSKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RSSKDVVKKK VYVCPEPTCI HHDLSRALGD LTGIKKHFCR KHGEKKWKCE KCTKRYAVHS  180
DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ENSSSSTLFS PKNLLSSPIN  240
SLQHLSTPYN LHPHAFSIKT EPENLHHHLF NPTQQELLLP STSIFDPSLI SQTNPNPTLF  300
QSSVTASSAP PHMSATALLQ RADQMGVTMR KPSAISPSPL MPPRHASSGD HHDVSESTTT  360
VAGSTGMVSS SCGEDRFMAG PGGSFFPLLG LETFWNEAAA LASTTATAAN NTVISLAAAD  420
EVRLPHWGMD QGTKDSGVPS TPHNRHLDHN QIMVMMNARN TVPSSKARLP GSYLSSSFNN  480
NESIMMRGIM NTLEEDNHFN SDLMEKEMES HSLIRRSDQG MTRDFLGLRA FSSVPGDLVK  540
VPRFDPMNSS SSSSSNYNYS NNKYGQQNKD QYQSLWQNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-97	C2H2 family protein