PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63645.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 105aa    MW: 12327.2 Da    PI: 10.537
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-25959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n s rqvtf+kRr g++KKA+ LS+LCdae+a+iifs tgkl+e+ss
  OWM63645.1  9 KKIDNLSARQVTFTKRRRGLIKKAHQLSTLCDAEIALIIFSFTGKLFEFSS 59
                68***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    
MTRKRTEIKK IDNLSARQVT FTKRRRGLIK KAHQLSTLCD AEIALIIFSF TGKLFEFSSS  60
RAEALFHFYC LSTEQVDDIP CALRKDLTDR ARELREHSFW KRTST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-29MIKC_MADS family protein