PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63648.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 69aa    MW: 7967.2 Da    PI: 10.7015
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien s rqvtf+kRr g++KKA+ LS+LCdae+a+iifsstgkl+e+ss
  OWM63648.1  9 KKIENLSARQVTFTKRRRGLIKKAHQLSTLCDAEIALIIFSSTGKLFEFSS 59
                78***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    
MTRKRIEIKK IENLSARQVT FTKRRRGLIK KAHQLSTLCD AEIALIIFSS TGKLFEFSSS  60
RSYSEESET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-25MIKC_MADS family protein