PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63674.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28672 Da    PI: 8.8852
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-231159351
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                i+ +  rqvtf kRr+g+lKKA+ELS+LCdae+ +iifs tg+ly+y+s
  OWM63674.1 11 INCSKSRQVTFFKRRTGLLKKAKELSILCDAEIGLIIFSCTGRLYDYAS 59
                666789*****************************************86 PP
2K-box721.8e-2482172999
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++ + +sl++e a Lk+ i++Lq+++R+l+G++L++  l+eL+ Le++L+ slk+iR++K+++++e+  el++k +++++en +Lrkkl+
  OWM63674.1  82 ISALEIQSLREENASLKQHISKLQESHRQLMGQELTKVRLEELNDLETKLDASLKNIRAQKDQVYKEEATELKQKIDRVEQENIELRKKLM 172
                 5667899**********************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MVKGKIVIQK INCSKSRQVT FFKRRTGLLK KAKELSILCD AEIGLIIFSC TGRLYDYAST  60
SMKSIIERYS NAKQELNDLP CISALEIQSL REENASLKQH ISKLQESHRQ LMGQELTKVR  120
LEELNDLETK LDASLKNIRA QKDQVYKEEA TELKQKIDRV EQENIELRKK LMSQIVQNIN  180
TDRKGDHHEH AMSSNHPLPI LELLKLFTAQ DPNPIKTGST LLPGNSARGL SANDDQKDTS  240
VPILNLSLSP PEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.18e-59MIKC_MADS family protein