PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63900.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20308.6 Da    PI: 11.1793
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.29.2e-231257449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ++  rqvtfskRrng++KKA+ELS+LC+a+va+++fs+ gk y +
  OWM63900.1 12 TDSGTRQVTFSKRRNGLFKKANELSTLCAAQVAILVFSPGGKPYSF 57
                67788************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MGRRKIEMKM VTDSGTRQVT FSKRRNGLFK KANELSTLCA AQVAILVFSP GGKPYSFGHP  60
NVESIIHRFL NSRKSNEEYF DQRANSNLEA IGQSNPNSNT DKVINLLKKF HAQRKRGKTL  120
VKMMRMKLQK GKAIVSQKFG KSKRSLEVLR DKLKNRINEI EASSSLLLLA EGLNEKIND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-33M-type_MADS family protein