PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64130.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C2H2
Protein Properties Length: 228aa    MW: 24893.8 Da    PI: 6.7772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-057597123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  OWM64130.1 75 YTCTFCKREFRSAQALGGHMNVH 97
                9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAARLSLLSL TQLQQLAQSE PATNYPGVPG SGDAQLVWNP TVRAPEELDD SWEVRAFAED  60
YTGSVSGSTW PPRCYTCTFC KREFRSAQAL GGHMNVHRRD RATKRLHHQL PPPAAALSSA  120
STSSSALVVP GQELANINRG LCVLYQLPPQ FDAAMSSNWF PAPVDNNLLA KPSTSFTSSH  180
AYSSKFIEAS SAQISNCHSR GDADGKWNKD FVEDLDLELR LGYKPLPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-34C2H2 family protein