PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64166.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 800aa    MW: 87992.1 Da    PI: 5.2734
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-2083138156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  OWM64166.1  83 KKRYHRHTARQIQEMEALFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 138
                 688899***********************************************998 PP
2START147.51.2e-462985262206
                 HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                 la++ ++elvk+  ++ep+W +s  +    +evl  +e +++                ea+r+s+v +m++ +lv  +ld + +W e ++    +a+t+
  OWM64166.1 298 LALSSMDELVKMCHLTEPLWLRSGdKYGATKEVLDYEEHARFfpyhysklcsaefGIKEASRDSAVIIMNSITLVDAFLDAN-KWMELFPsivsRAKTI 395
                 67899*******************84444455555555555566666799888877889***********************.**************** PP

                 EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
       START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                 +vi sg      g l+lm+aelq+lsplvp R+ +f+R ++q  ++g+w+ivd  +ds  ++   +s+ R +++pSg++i++++ng+s+vtwveh + +
  OWM64166.1 396 QVIASGisghasGSLHLMYAELQVLSPLVPtRETYFLRNCQQnVEEGTWAIVDFPIDSFHENL-PPSFPRYRRRPSGCVIQDMPNGYSRVTWVEHGEIE 493
                 ******************************************99*************999998.79********************************* PP

                 SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                 ++ +h ++ ++v +++a+ga++w+a lqrqce+
  OWM64166.1 494 EKPVHPIFGQFVCTEMAFGAQRWLAVLQRQCER 526
                 *******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    
MGGSGISSDS LFSSPIRNPN FDFMASLPFN AFAPVIPKEE NGVMRSGKEE MESGGSGSEL  60
HLDEKSVNEI QEGGDPQLPN AKKKRYHRHT ARQIQEMEAL FKECPHPDDK QRMRLSQELG  120
LKPRQVKFWF QNRRTQMKAQ QDRAENVMLR AENENLKNEN YRLQAALRNV ICPNCGGPAM  180
LGEMGFDEQQ LRIDNARLKE ELERVCCIAS RYGGPQVQAM LTGGAPSLLP PSLDLDMNIY  240
SSRQNFPQDP SMVTTCSELM PTIPILATDG QPPAANVPEG GGSLVLVEEE KYGLALDLAL  300
SSMDELVKMC HLTEPLWLRS GDKYGATKEV LDYEEHARFF PYHYSKLCSA EFGIKEASRD  360
SAVIIMNSIT LVDAFLDANK WMELFPSIVS RAKTIQVIAS GISGHASGSL HLMYAELQVL  420
SPLVPTRETY FLRNCQQNVE EGTWAIVDFP IDSFHENLPP SFPRYRRRPS GCVIQDMPNG  480
YSRVTWVEHG EIEEKPVHPI FGQFVCTEMA FGAQRWLAVL QRQCERVASL MARNISDLGV  540
IPSPEARRNL MRLSQRMIRT FCINISTSGG QSWTAISDSG DDTVRVTTRK ITEPGQPNGV  600
VLAAVSSTWL PYPHYQVFDL LKDERRRSQG LTNIFLIPED TVDVQVASNS SQHVELMLQE  660
SCTDHSGSLV VYSTIDVDSV QLAMNGEDPS CIPLLPIGFS IVPAVCPGPT SGKDGSVPPP  720
PEGGDSPISG CLLTVGLQVL ASTVPTAKLN LSSITAINTH ICNTVHQISS ALCNGSLNCP  780
TDHVGPLVGL CSELSGSPGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein