PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64362.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 663aa    MW: 73080 Da    PI: 7.3173
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.6e-202479156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ ++++++q+++Le++F+++++p++++r++L++ lgL+ +q+k+WFqN+R++ k
  OWM64362.1 24 KKSYHRHNSHQIQQLEAFFKECPHPDENQRRQLSRDLGLEPKQIKFWFQNKRTQTK 79
                6888999*********************************************9987 PP
2START1463.5e-461894093206
                 HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
       START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                 a  a++el k+  ++ep+W+kss      + +d + ++f++s+       + e +++s++v m++++lv ++ld   +W  +++    +a t++vi++g
  OWM64362.1 189 AAGALDELTKLLRLNEPLWTKSSadgrYLLLRDSYDKIFPRSNHfksssARFESSKDSVLVAMNSVNLVDTFLDAD-KWADMFPtiitQARTIQVIEPG 286
                 567899*****************97776677899999999988899999999************************.********************** PP

                 ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS
       START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179
                       g lqlm+ +l +lsplvp R+f+f+Ry++q + g wvi+dvS +s ++        R+ +lpSg++i++++ g skvtwvehv++++++  h 
  OWM64362.1 287 isgsrsGSLQLMYEQLHVLSPLVPpREFYFLRYCQQIEVGLWVIADVSYESVSQSIL---PSRSWRLPSGCMIQDMPHGCSKVTWVEHVEVDDKTQtHR 382
                 ****************************************************99764...668888***************************9998** PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 l+r +v sgla ga +wva+lqr ce+
  OWM64362.1 383 LYRDIVCSGLAYGAERWVAALQRTCER 409
                 *************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    
MNSGSGSGCS GDEQESTSSA GKGKKSYHRH NSHQIQQLEA FFKECPHPDE NQRRQLSRDL  60
GLEPKQIKFW FQNKRTQTKA QSERADNSTL RAENERIYSE NLAIKEALKN YEKVSNLLTR  120
YIGRPISQIE SLMPVRGSSL DCPSATFSNQ GVGNPSSDLN VAPAKTSALP LYQAKGIPEM  180
EKALMVETAA GALDELTKLL RLNEPLWTKS SADGRYLLLR DSYDKIFPRS NHFKSSSARF  240
ESSKDSVLVA MNSVNLVDTF LDADKWADMF PTIITQARTI QVIEPGISGS RSGSLQLMYE  300
QLHVLSPLVP PREFYFLRYC QQIEVGLWVI ADVSYESVSQ SILPSRSWRL PSGCMIQDMP  360
HGCSKVTWVE HVEVDDKTQT HRLYRDIVCS GLAYGAERWV AALQRTCERL TYSMGDDAVA  420
RDLGGVISLC EGRRSIMKLA WRMVKNFCAT LSMSGKLDFP QLSEVNNSGV RISIRKSTSL  480
GEPGGTIVGA ATSLWLPVPP QRLFNFFRDE KMRVQWDVLA NGNPVHEVAH ISNGPHPGNS  540
ISIIRPYIPT ENMLMLQESC IDHLGSLIVS APVDVPSINE AVSGGDSSII PILPSGFIIC  600
GDSRPGPGSD TKGGCLLTVA FQVLVAAPSS ENHLNLDSIA TINTLISSTV QRIKAALNSS  660
RLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein