PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM64446.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 372aa MW: 41106.3 Da PI: 7.3551

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM64446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.1	3.8e-39	102	239	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssgkaaksaa 95 a+kkdrhski+T++g RdRRvRls+ +a++fFdLqd+LGfdk+s+t+eWLl+++k+aike+++ + ++ ++ a+s++++a+ +s+g+++ + OWM64446.1 102 AAKKDRHSKICTAQGVRDRRVRLSIGIAREFFDLQDMLGFDKASQTLEWLLTKSKRAIKEAARAKEQQTGRAgaaayPAGSEKEAAADDSKGSSSDLTI 200 89**************************************************************44444222233445555555555444443333332 PP TCP 96 kskksqksaasalnlakesr........akarararertre 128 sk++ +++ +ln +e a+arar r r + OWM64446.1 201 -SKEEMPQEE-VLNNIHELIrgkdedswANARARDRGRAKR 239 .222222222.233333222244556556666666664333 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MFAPNDNNSS SNINNWPVKL SPNLQPFVPP PSSSSPPACS SHPFPPFSYN HQDPLTHDHQ 60 FLLLNHETLS NNNYMGPFHE NSPNFAIFSS SSFPPPPNAA QAAKKDRHSK ICTAQGVRDR 120 RVRLSIGIAR EFFDLQDMLG FDKASQTLEW LLTKSKRAIK EAARAKEQQT GRAGAAAYPA 180 GSEKEAAADD SKGSSSDLTI SKEEMPQEEV LNNIHELIRG KDEDSWANAR ARDRGRAKRE 240 KTYCCVSPNS NGVVVHHHQS IRDHSNSSSS SQLVKPSQYH LYSSLAPPNS NGVVLHHHQS 300 IRDHSNSSSS SQLVKPSQHH LYSSLAPPGG DDLPPLNTED SKKNDFSLPA QNWDINYNSM 360 VLQPSSFGEP YI

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MFAPNDNNSS SNINNWPVKL SPNLQPFVPP PSSSSPPACS SHPFPPFSYN HQDPLTHDHQ  60
FLLLNHETLS NNNYMGPFHE NSPNFAIFSS SSFPPPPNAA QAAKKDRHSK ICTAQGVRDR  120
RVRLSIGIAR EFFDLQDMLG FDKASQTLEW LLTKSKRAIK EAARAKEQQT GRAGAAAYPA  180
GSEKEAAADD SKGSSSDLTI SKEEMPQEEV LNNIHELIRG KDEDSWANAR ARDRGRAKRE  240
KTYCCVSPNS NGVVVHHHQS IRDHSNSSSS SQLVKPSQYH LYSSLAPPNS NGVVLHHHQS  300
IRDHSNSSSS SQLVKPSQHH LYSSLAPPGG DDLPPLNTED SKKNDFSLPA QNWDINYNSM  360
VLQPSSFGEP YI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-24	TCP family protein