PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM64496.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28634.6 Da PI: 8.5687

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM64496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s OWM64496.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	90.6	2.9e-30	83	173	10	100
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ e +++e+ kLk + e Lqr+qR+llGedL++L+ keL+qLe+qL++slk +Rs+K++ +l+q+++lq+ e+ l e+n++L klee OWM64496.1 83 PNKELEASYREYLKLKGRFEALQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKLVRSTKTQCMLDQLSDLQNNEQLLMEANRTLAVKLEE 173 56788999*****************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS 60 SNMLKTLERY QKCSYGPVEV NKPNKELEAS YREYLKLKGR FEALQRTQRN LLGEDLGPLN 120 SKELEQLERQ LDSSLKLVRS TKTQCMLDQL SDLQNNEQLL MEANRTLAVK LEELCLRNNI 180 RPPWEGGEEQ RMPYGHHHQN SSSQGFTHPL ECNPTLQIGY NAVESDQMTS ATTTTHPQQV 240 NGFLPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-127	MIKC_MADS family protein