PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64771.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25441.1 Da    PI: 8.9493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.8e-191862448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                  k   qvtfskRr g++KKA+EL++LC++e+ +++fs+  k + 
  OWM64771.1 18 PKKNHLQVTFSKRRSGLFKKASELCTLCGVEITILVFSPASKAFS 62
                5667789*******************************9887655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MAKKPSLGRQ KIAIAKIPKK NHLQVTFSKR RSGLFKKASE LCTLCGVEIT ILVFSPASKA  60
FSFGHPEVDS ILDRFLACNN PALDSGVRQL FEVHRSANIR ELNGILTQVM DQLEVEKRRG  120
EELDNARKGK SQYWWESPID EINNPNKLEQ LRSSLEELKQ NVMRQTNKLM MDPVSLMTPF  180
LGPDCNGSNS SGDQFERKPN LDQVNHISAN FLQYFSFPQE NGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-48M-type_MADS family protein