PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64792.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 218aa    MW: 23756 Da    PI: 5.1402
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26064.62.5e-20295198
      DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96
                +C++C+vlr++C+++Cvl++++     p++q++++ +v+k+FG++++l++++a+pe +r+++          r+ +Pv G+vg+++++++ql+q+++e++l
  OWM64792.1  2 SCNGCRVLRKGCSEQCVLRQCLrgvvgPQAQANATLFVAKFFGRATLLSFVSAVPEPHRPAV---------GRTINPVGGVVGLLWTGNWQLCQSSVETVL 93
                6**********************************************************966.........6677*********************99988 PP

      DUF260 97 lk 98
                ++
  OWM64792.1 94 QG 95
                76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MSCNGCRVLR KGCSEQCVLR QCLRGVVGPQ AQANATLFVA KFFGRATLLS FVSAVPEPHR  60
PAVGRTINPV GGVVGLLWTG NWQLCQSSVE TVLQGGPLQP LPELASRNPC PDSDNCSESG  120
IDYFRPDLTE SPKVINPPSK SFDDEDELKF QRCDDLDLSL KSTMPMPVEE SEMCPLRSKK  180
RRAETPPEEE SKTTASGSGS SSDGGLERRE RPLLSLFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-43LBD family protein