PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM64806.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HB-PHD

Protein Properties

Length: 870aa MW: 95897.6 Da PI: 5.0272

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM64806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.3	8e-11	721	761	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++L e+F+ n+yp+++++e LA++lg+t qV WF N R OWM64806.1 721 KKRLYEAFNLNHYPDRATKESLAAELGITCLQVDKWFGNAR 761 57899**********************************99 PP
2	PHD	39	1.9e-13	381	436	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k OWM64806.1 381 FCAKCGSkdLTLDNDIILCDGaCQRGFHQFCLDPPLLKEDIPPGdqGWLCPGCDCK 436 699*965555****66****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MTGNEEGKKQ KPEIVSETLE AGHNQQAASA IPLGNAAHFS PNVQTNAARK AMIKDAHELN 60 SADMVTLQEE RDQLASEGPG TVQVGSVVNE RLHGPSENVA TNSPLEGIIP IPEGMGGSNP 120 TGNRSCHIYA QLNENIGCCS DSLSHEPSKT FQNLTDPLIS QELNLAVKAE PICEVVEICP 180 EDGTNCLVTE QFELPVEVIS NLDHLETPAG NPAKNIVRSG RRDKRNSTRM KKKYILRSSL 240 GNNSKALRSR AGKKSKSLES DYQSGDTTAP EESKRIRRKK QRTRKVTADE YTRIKKNLSY 300 MLNRIRYERS LIDAYSSEGW KGLSLEKLKP EKELQRATSE IIRRKLKIRD LFQRLDAMCA 360 EGRLPEALFD EEGMISSEDI FCAKCGSKDL TLDNDIILCD GACQRGFHQF CLDPPLLKED 420 IPPGDQGWLC PGCDCKVDCL DLLNESQETN LSITDSWEKV FPEAVNAGNQ DPTSGLSSDD 480 SEDEDFDPDR LQTNRKVQGD ESSSDESEYA TASDNSEPQA KDNQYLGLPS DDSEDDDYDP 540 DAPNPDKVKE ENSSSDFTSD SEDLKAALLD DDPNGSNGVP ESSSLKGRRG PKRKNSEGGG 600 KKQAINELHS LLESEPGESG AATSVSAKRH VERLDYKKLH DETYGGTSSD TSDDEDWTDT 660 SSPKKRKRNG EDEKQQKEEI SVSINKTRSR RKSEDTSTPS ATKPSAKNQS SSSRRLGEAV 720 KKRLYEAFNL NHYPDRATKE SLAAELGITC LQVDKWFGNA RWCFNHPSGR KAKVPAKDDN 780 KDTTHLPQAV MKSNEEILSN GTQKEGNPGV TASIPGSSEK EDEREKKLSE PREEFNNREG 840 STVGNKKYKA SKAPMAVGQT SGIQTRRSAS

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MTGNEEGKKQ KPEIVSETLE AGHNQQAASA IPLGNAAHFS PNVQTNAARK AMIKDAHELN  60
SADMVTLQEE RDQLASEGPG TVQVGSVVNE RLHGPSENVA TNSPLEGIIP IPEGMGGSNP  120
TGNRSCHIYA QLNENIGCCS DSLSHEPSKT FQNLTDPLIS QELNLAVKAE PICEVVEICP  180
EDGTNCLVTE QFELPVEVIS NLDHLETPAG NPAKNIVRSG RRDKRNSTRM KKKYILRSSL  240
GNNSKALRSR AGKKSKSLES DYQSGDTTAP EESKRIRRKK QRTRKVTADE YTRIKKNLSY  300
MLNRIRYERS LIDAYSSEGW KGLSLEKLKP EKELQRATSE IIRRKLKIRD LFQRLDAMCA  360
EGRLPEALFD EEGMISSEDI FCAKCGSKDL TLDNDIILCD GACQRGFHQF CLDPPLLKED  420
IPPGDQGWLC PGCDCKVDCL DLLNESQETN LSITDSWEKV FPEAVNAGNQ DPTSGLSSDD  480
SEDEDFDPDR LQTNRKVQGD ESSSDESEYA TASDNSEPQA KDNQYLGLPS DDSEDDDYDP  540
DAPNPDKVKE ENSSSDFTSD SEDLKAALLD DDPNGSNGVP ESSSLKGRRG PKRKNSEGGG  600
KKQAINELHS LLESEPGESG AATSVSAKRH VERLDYKKLH DETYGGTSSD TSDDEDWTDT  660
SSPKKRKRNG EDEKQQKEEI SVSINKTRSR RKSEDTSTPS ATKPSAKNQS SSSRRLGEAV  720
KKRLYEAFNL NHYPDRATKE SLAAELGITC LQVDKWFGNA RWCFNHPSGR KAKVPAKDDN  780
KDTTHLPQAV MKSNEEILSN GTQKEGNPGV TASIPGSSEK EDEREKKLSE PREEFNNREG  840
STVGNKKYKA SKAPMAVGQT SGIQTRRSAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	256	RRDKRNSTRMKKKYILRSSLGNNSKALRSRAGKKSK
2	278	284	RKKQRTR
3	588	594	RRGPKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-112	HB-PHD family protein