PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64846.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21284.4 Da    PI: 8.6088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-152965844
                HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 r vtf+kRr+g++ KA E+S+LC+ +va++ fs+  
  OWM64846.1 29 IRRVTFTKRRKGLFEKAAEMSILCGSKVAILTFSEGR 65
                589*******************************865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MADTSKAPLP RSTRGRQKIE IKKREKVEIR RVTFTKRRKG LFEKAAEMSI LCGSKVAILT  60
FSEGRKAFCF GNPDPDAVLE GYLNGRSLGE IEPSGAYIQA LNESKQLYLE ASMRLERERT  120
KAKCAVQPGP PGFWWGSPMD DLCPEELEYY HNALERMMKT VTAKIEEGSN MEPGPASGLS  180
SLDPQGNNLL V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12239KKREKVEIRRVTFTKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-23M-type_MADS family protein