PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64911.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family YABBY
Protein Properties Length: 201aa    MW: 22481.8 Da    PI: 8.874
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY196.31.3e-601816323170
       YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPek 121
                  vsvP +slfk+vtvrCGhCt+llsvn++      +a+++l+   +    ++l  e +n  +n++ +  +  ++s+++l +   +++p++p v+rPPek
  OWM64911.1  18 TVSVPCSSLFKTVTVRCGHCTNLLSVNMRALLLPAPASHQLHLGHTYFTPQNLLEEIRNAPTNMMIN-PPIPNESMMQL-RGGIDDIPKPPVVNRPPEK 114
                 59*************************9999999999888777666666666666666666665544.44444455454.456679***999******* PP

       YABBY 122 rqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 rqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  OWM64911.1 115 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 163
                 ***********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MESNGHGLVT FEAVVRDTVS VPCSSLFKTV TVRCGHCTNL LSVNMRALLL PAPASHQLHL  60
GHTYFTPQNL LEEIRNAPTN MMINPPIPNE SMMQLRGGID DIPKPPVVNR PPEKRQRVPS  120
AYNRFIKDEI QRIKAGNPDI SHREAFSAAA KNWAHFPHIH FGLMSDQPVK KPNLRQQEGE  180
DMLNMKDGFF PPTANVGVSP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-81YABBY family protein