PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64951.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 226aa    MW: 24380.8 Da    PI: 8.0549
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-38201201100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf +eq + +fa+vhk+FGasn +kll  lp+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l++ela+++
  OWM64951.1  20 PCGACKFLRRKCVNGCVFAPYFDSEQgATHFAAVHKVFGASNASKLLLCLPPHRRLDAVLTLCYEAIARVRDPVYGCVAHIFTLQQQVVNLQSELAYVQ 118
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  OWM64951.1 119 AR 120
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MQKTERSNNR GGGGGGASGP CGACKFLRRK CVNGCVFAPY FDSEQGATHF AAVHKVFGAS  60
NASKLLLCLP PHRRLDAVLT LCYEAIARVR DPVYGCVAHI FTLQQQVVNL QSELAYVQAR  120
LSTFRSFPSP PSLLNSQPSL QATSSDHMAL VLDNNISSYP NLPVPPALDP IELLQQATGE  180
MVDSSDTPST QQLADAQLQA IAREFISRYL PGVKIEPPGP PKGFQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-52LBD family protein