PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM64979.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 165aa MW: 19240.7 Da PI: 10.0186

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM64979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.3e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gklye+ OWM64979.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	87.2	3.3e-29	91	162	13	84
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +++s++qe++kLk + e+Lqr+qR+llGedL++L+lkeL +Le+qLe +l + R+++++l++eq+e+l+kk OWM64979.1 91 HMQSWCQEVTKLKVKFESLQRTQRQLLGEDLGPLNLKELLNLEKQLEGALAQTRQRRTQLMVEQVEDLRKKD 162 78********************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence
MGRGRVEVKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFGSA 60 GLMLFFTLYN VYVILCGVYS FLTHWIICIL HMQSWCQEVT KLKVKFESLQ RTQRQLLGED 120 LGPLNLKELL NLEKQLEGAL AQTRQRRTQL MVEQVEDLRK KDLTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-62	MIKC_MADS family protein