PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64980.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23770.1 Da    PI: 5.9437
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF947.1e-301059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rien + rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gklye++s
  OWM64980.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRGKLYEFAS 59
                8***********************************************86 PP
2K-box48.34.5e-1778163497
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 ++ k+ +e++ + ++qe a L  +ie L+ ++R+llG +L+++s++eLqq+eqqLe s        +++++eqieel++ke  l  en +L  k
  OWM64980.1  78 KEEKRSTEHEIQLYKQETADLMTKIELLEASKRKLLGGGLGDCSIEELQQIEQQLEMS--------TQVFKEQIEELKEKEMVLTAENAMLCDK 163
                 3445589999**********************************************99........79*********************99766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RGKLYEFASS  60
SVQDTIERYM KHTKDKRKEE KRSTEHEIQL YKQETADLMT KIELLEASKR KLLGGGLGDC  120
SIEELQQIEQ QLEMSTQVFK EQIEELKEKE MVLTAENAML CDKCGVQPQQ EAAKELFGWN  180
SSSSLRESSS GVTSEDVETQ LFIGPPPGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-70MIKC_MADS family protein