PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65159.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 366aa MW: 41194 Da PI: 7.1518

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	143.1	2.2e-44	111	273	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssas...nsss 87 kkdrhski T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skt+eWLl+q+k aikel ++ + ss+sec+ +s + +s + OWM65159.1 111 SKKDRHSKINTAQGPRDRRMRLSLDVARKFFYLQDMLGFDKASKTVEWLLNQSKSAIKELSKDlisnntcklagEESSPSECDVVSGVFDESvdaF--- 206 69***********************************************************777777777773333345522222222222221... PP TCP 88 g.....................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + +++ +a+s++++++ s +la+esr+karara+ertrekm + OWM65159.1 207 NndgdqpdkpeddskgfqsetpSRKVRKASSSQASTRRISPTHLARESREKARARAKERTREKMLVR 273 1333445566777777877766444444455555555555688999****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MFPSSHNAND PNIVSLPFLG DLITNSKQDQ DLLLPLSLFN FPSSPFSFFT EEDGAVFLQP 60 LTDHSLPDTK VDAMEPSKQF LGMNQPTNDK KREHHPSKNI TKQFVPRKRS SKKDRHSKIN 120 TAQGPRDRRM RLSLDVARKF FYLQDMLGFD KASKTVEWLL NQSKSAIKEL SKDLISNNTC 180 KLAGEESSPS ECDVVSGVFD ESVDAFNNDG DQPDKPEDDS KGFQSETPSR KVRKASSSQA 240 STRRISPTHL ARESREKARA RAKERTREKM LVRELNINNG SKPFEMGEEP GTGQLGNNNM 300 KLSSMEVQAE VGEAKQLGAM TEQTIDNSLA FTSNYMQSNV LQENQFRDFP LYLRSSEAFS 360 GSSYLF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MFPSSHNAND PNIVSLPFLG DLITNSKQDQ DLLLPLSLFN FPSSPFSFFT EEDGAVFLQP  60
LTDHSLPDTK VDAMEPSKQF LGMNQPTNDK KREHHPSKNI TKQFVPRKRS SKKDRHSKIN  120
TAQGPRDRRM RLSLDVARKF FYLQDMLGFD KASKTVEWLL NQSKSAIKEL SKDLISNNTC  180
KLAGEESSPS ECDVVSGVFD ESVDAFNNDG DQPDKPEDDS KGFQSETPSR KVRKASSSQA  240
STRRISPTHL ARESREKARA RAKERTREKM LVRELNINNG SKPFEMGEEP GTGQLGNNNM  300
KLSSMEVQAE VGEAKQLGAM TEQTIDNSLA FTSNYMQSNV LQENQFRDFP LYLRSSEAFS  360
GSSYLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-22	TCP family protein