PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65172.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family NF-YB
Protein Properties Length: 186aa    MW: 20748.7 Da    PI: 4.4057
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB68.89.9e-22481231085
       NF-YB  10 ianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                 +a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c+re+++ti+++ +l al  lGf +y+e++ +
  OWM65172.1  48 VATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYA 123
                 7899********************************************************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVAT MTKIIKEMLP  60
PDVRVARDAQ DLLIECCVEF INLVSSESNE VCNREEKRTI APEHVLKALE VLGFGEYIEE  120
VYAAYEQHKL ETMDSLKGGK WSNGAEMTEE EALAEQQRMF AEARARMNGG AAPPKQPEAD  180
HPNVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-88NF-YB family protein