PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65210.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 29242.3 Da PI: 9.8781

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.9	3.7e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+S+LCdaeva+iifs++gkl+eyss OWM65210.1 9 KRIENKINRQVTFSKRRVGLLKKAHEISILCDAEVALIIFSTKGKLFEYSS 59 79***********************************************96 PP
2	K-box	102.1	7.6e-34	84	175	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++ ++ e+akLk+++e Lqr+qRh++GedL+sLslk+Lq+Le+qL+++lk+iR++Kn+l++e+i+elq+k k+lqe+n+ L k+++e OWM65210.1 84 NGSNETHDWHLEHAKLKARVEVLQRNQRHYKGEDLDSLSLKDLQSLEHQLDSGLKHIRTRKNQLMHESISELQRKDKALQEQNNVLLKRVKE 175 66788999******************************************************************************999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRVGLLK KAHEISILCD AEVALIIFST KGKLFEYSSD 60 SCMERILERY ERYSYAERQI LGSNGSNETH DWHLEHAKLK ARVEVLQRNQ RHYKGEDLDS 120 LSLKDLQSLE HQLDSGLKHI RTRKNQLMHE SISELQRKDK ALQEQNNVLL KRVKEKERKE 180 KEMAESQVAS LDRQHNEHSV NSAVVVLPPA SNPLSSFSPC QERLDGRLDG GKSAQLNRAA 240 SLLPPWMLRE DLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	9e-86	MIKC_MADS family protein