PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65211.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28813.5 Da PI: 8.2943

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.1	1.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs++gkly +ss OWM65211.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSTRGKLYQFSS 59 79***********************************************96 PP
2	K-box	100.2	2.9e-33	79	174	5	100
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +s + ++++s++qe+ kLk+++e Lq++qR+llGedL+sLs+keL+qLe+qLe+slk+iRs+K++ + +q +lqk+e++l e+n++Lr+klee OWM65211.1 79 LESSRQITETQSSYQEYLKLKARVEDLQQTQRNLLGEDLGSLSMKELEQLERQLESSLKHIRSTKDQSMNDQFTDLQKREQMLLEANESLRRKLEE 174 4445788999***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFST RGKLYQFSSS 60 SSMSKTLERY QRCSYNAQLE SSRQITETQS SYQEYLKLKA RVEDLQQTQR NLLGEDLGSL 120 SMKELEQLER QLESSLKHIR STKDQSMNDQ FTDLQKREQM LLEANESLRR KLEESCAHFP 180 FQLSWEAAGA QLNLPYGRIP APQAEANFFH PLDCNSTLQI GYNQMGSTDD QVNAASTSQT 240 VTGYIPGWMF N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	4e-88	MIKC_MADS family protein