PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65287.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

M-type_MADS

Protein Properties

Length: 381aa MW: 43497.4 Da PI: 7.1245

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72	4.9e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+ snrq+t+skRr+gilKKA+ELS+LCd+++ +++fs+tgk OWM65287.1 9 KRLESVSNRQITYSKRRHGILKKAKELSILCDIDIVLLMFSPTGK 53 6889***************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGRVKLKIKR LESVSNRQIT YSKRRHGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE 60 RSTFEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQDFLGAS SQTAEDMTNQ 120 VRLLQGQLAE VQKRLSYWSD PEKIDNIEHL RQMEDSLRES IGQLRRHKEN IGKHQLMSLE 180 RTNQYENGMQ LPFVMPGMQE VQPLSWLPIN ENHHLMFQSD PNFLSHGAIA SSSDASLPGC 240 SAYYSGGDKQ AEIGHMGQVD NLVQDGCVLN DLNGNSCLRL QVGDQYQYPH YAGLNLADDK 300 KIKHEMEMNI RGHPVEYQVG GNVELPRPIY DDGHHNWGTG HAPCGITMYN GTSYNQASFF 360 TTYSSLFYVA MEIFCWHYVY K

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGRVKLKIKR LESVSNRQIT YSKRRHGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE  60
RSTFEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQDFLGAS SQTAEDMTNQ  120
VRLLQGQLAE VQKRLSYWSD PEKIDNIEHL RQMEDSLRES IGQLRRHKEN IGKHQLMSLE  180
RTNQYENGMQ LPFVMPGMQE VQPLSWLPIN ENHHLMFQSD PNFLSHGAIA SSSDASLPGC  240
SAYYSGGDKQ AEIGHMGQVD NLVQDGCVLN DLNGNSCLRL QVGDQYQYPH YAGLNLADDK  300
KIKHEMEMNI RGHPVEYQVG GNVELPRPIY DDGHHNWGTG HAPCGITMYN GTSYNQASFF  360
TTYSSLFYVA MEIFCWHYVY K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-106	M-type_MADS family protein