PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65299.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 359aa MW: 39854 Da PI: 6.3115

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl OWM65299.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.9	3.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l OWM65299.1 67 RGNFTEDEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEDEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRRFQ 120 SGVDSSEEGF RSSQPSMSKG QWERRLQTDI HMAKQALCEA LSLDKSSPFL TQHATKPVTS 180 SSDVFDVNSC NDVAASKLSQ SSSAYASSAD NIARLLEGWM KNSPQKKSPC SSSSRSAQTK 240 SETTTTTTTH ENNSFANTNN YMLASGSSSS DGGFDSLFSF NSSNSDVVST QSDSPEGYCP 300 FQDESKPNLE AIAPSQVPFS LLEKWLLDDN CGFTQGHAYD LINNMAIDDD GDHEERSLF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEDEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRRFQ  120
SGVDSSEEGF RSSQPSMSKG QWERRLQTDI HMAKQALCEA LSLDKSSPFL TQHATKPVTS  180
SSDVFDVNSC NDVAASKLSQ SSSAYASSAD NIARLLEGWM KNSPQKKSPC SSSSRSAQTK  240
SETTTTTTTH ENNSFANTNN YMLASGSSSS DGGFDSLFSF NSSNSDVVST QSDSPEGYCP  300
FQDESKPNLE AIAPSQVPFS LLEKWLLDDN CGFTQGHAYD LINNMAIDDD GDHEERSLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	1e-101	MYB family protein