PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65334.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 272aa    MW: 31165.2 Da    PI: 4.366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-194093356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++t++q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  OWM65334.1 40 KKRRLTANQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 93
                56789************************************************9 PP
2HD-ZIP_I/II129.81.1e-4139129191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+++qv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+++ydalk++ e+L ke ++L++e+
   OWM65334.1  39 EKKRRLTANQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDALQANYDALKSDFENLLKERDALESEV 129
                  69*************************************************************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MLSFENIHGA NGPTSSIFRP FDNDENGEED IDEFFHQPEK KRRLTANQVQ FLEKSFEVEN  60
KLEPERKVQL AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YDALQANYDA LKSDFENLLK  120
ERDALESEVL VLKDRLLRKD KEESENPKLP VVLSQEPTEP VLASSSDGEV SEVPILVSKQ  180
DDICSAKSDI IDSDSPHFTG HSSHLEPADS SYAFEPEQSD LSQDEEDVPS KNFLSVFPKL  240
ESSDYQENPP ASSCHFGFHT GDQDHAFWSW SY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-41HD-ZIP family protein