PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65341.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 250aa    MW: 28418.6 Da    PI: 8.2688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.21.1e-32101101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aC aCk++rrkC+ dC lapyfpa++p+ f+nvh+lFG+++++k+l+ + ++ +r + m+s++y+A++r   Pv G++ vi  + +q++ l++el+++ 
  OWM65341.1  10 ACGACKFQRRKCTLDCLLAPYFPADKPEVFKNVHRLFGVKKIVKTLEIIkDPFQRAEFMTSMIYQANMREMFPVLGCCHVIDLYYSQISLLEEELHSVY 108
                 7***********************************************966778*****************************************9987 PP

      DUF260  99 ee 100
                 ++
  OWM65341.1 109 SQ 110
                 66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MTPKGGLSQA CGACKFQRRK CTLDCLLAPY FPADKPEVFK NVHRLFGVKK IVKTLEIIKD  60
PFQRAEFMTS MIYQANMREM FPVLGCCHVI DLYYSQISLL EEELHSVYSQ LDYYHSRHDN  120
QVMTTLRAIT VPSCLDPKDT IPNPSLWIRS PHTNSDIDHK KNDDSFPAVH PQFAGTTTAP  180
QSLMAMHQQT IQDYKDMKSS SKSIGNEQLS VHSKGCLQIK FGINAERHDA VHGACSRERS  240
KGCYRMLQSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-36LBD family protein