PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65416.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 338aa    MW: 38132.6 Da    PI: 5.4326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l ++ +++G++ +W+++++  g+ R++k+c++rw++yl
       OWM65416.1 14 KGLWSPDEDEKLFNYMTRYGTNgCWSSVPKLAGLQRCGKSCRLRWLNYL 62
                     678********************************************97 PP
2Myb_DNA-binding52.41.2e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E++l+++++k lG++ W+ Ia  ++ gRt++++k++w++yl
       OWM65416.1  68 RGTFSQDEEDLIINLHKILGNR-WAQIAGQLP-GRTDNEIKNFWNSYL 113
                      899*******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGKHSCCVKQ KLRKGLWSPD EDEKLFNYMT RYGTNGCWSS VPKLAGLQRC GKSCRLRWLN  60
YLRPDLKRGT FSQDEEDLII NLHKILGNRW AQIAGQLPGR TDNEIKNFWN SYLKKKLMKQ  120
GINPATHQPL AEVQVKEEND ESLLQPQEEV RTVSSLRARE PTFLVNDTLA DHHNIGLVDS  180
SRGMNGSALE YSLPFFECQA GLDPDLCNPS LMMSQYHSNS RSIFDNQNCI GTSPGIKFSS  240
MPSLTNYENS TSKECSSNSS NISSYSSGIQ VNDASENEAF DCLFQFAVKS KDDLNPSSWQ  300
LEEEHLVIDG SSVNFNSYQL TSLSEDFTRT GFGIFDQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-77MYB family protein