PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65467.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 486aa MW: 53693.4 Da PI: 5.8238

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41	3.2e-13	160	182	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G++CkF+H+ OWM65467.1 160 EDCAFYMKTGTCKFGSNCKFNHP 182 89********************8 PP
2	zf-CCCH	29.7	1.1e-09	206	230	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++ G CkyG C+F+H++ OWM65467.1 206 QVECKYYLTPGGCKYGKACRFSHSK 230 789********************95 PP
3	zf-CCCH	36.9	6.2e-12	252	276	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++rtGtCk+ ++CkF+H+ OWM65467.1 252 GEKECPFYMRTGTCKFAANCKFNHP 276 7899********************9 PP
4	zf-CCCH	26.8	9.1e-09	378	404	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ OWM65467.1 378 PGQPECSYFLKTGDCKFKSNCKYHHPK 404 5789*********************96 PP
5	zf-CCCH	36.3	9.5e-12	426	450	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G+Ck+G+ CkF H++ OWM65467.1 426 QNICSYYSRYGICKFGPACKFDHSM 450 679********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MESKNFFKWF FSPNSASSAA PSEGSSSSSP TPAAAAAAAM PSPDGKSNPA PPDSDNAPPD 60 PHPQAGDQLS AKVQELDLKE PEPEPAGQEP QGGVPASRER YEGRAEEVKH DRDEHTEEEK 120 RNEDGNESDK DGDDQKEEEE EEEERGFGRK NKFPVRPDAE DCAFYMKTGT CKFGSNCKFN 180 HPIRRKPQVA KERVKDREES KDKTGQVECK YYLTPGGCKY GKACRFSHSK ANPVAPAPAV 240 ELNFLGLPIR PGEKECPFYM RTGTCKFAAN CKFNHPDPTS GGDPPMEFSN GGSTPLQNAS 300 QFPVWSPSGT LNNECTPYVP MMYSPTQVVS SPNAEWNFQG QSMHPAPAYI MNSPTTTESH 360 IYTNHQQQMA VEEFPERPGQ PECSYFLKTG DCKFKSNCKY HHPKDRVQKS PQVALSDKGL 420 PLRPDQNICS YYSRYGICKF GPACKFDHSM QLAPSGLEKQ PSMKNCPGED DPRMGRPRTA 480 GEPTAI

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MESKNFFKWF FSPNSASSAA PSEGSSSSSP TPAAAAAAAM PSPDGKSNPA PPDSDNAPPD  60
PHPQAGDQLS AKVQELDLKE PEPEPAGQEP QGGVPASRER YEGRAEEVKH DRDEHTEEEK  120
RNEDGNESDK DGDDQKEEEE EEEERGFGRK NKFPVRPDAE DCAFYMKTGT CKFGSNCKFN  180
HPIRRKPQVA KERVKDREES KDKTGQVECK YYLTPGGCKY GKACRFSHSK ANPVAPAPAV  240
ELNFLGLPIR PGEKECPFYM RTGTCKFAAN CKFNHPDPTS GGDPPMEFSN GGSTPLQNAS  300
QFPVWSPSGT LNNECTPYVP MMYSPTQVVS SPNAEWNFQG QSMHPAPAYI MNSPTTTESH  360
IYTNHQQQMA VEEFPERPGQ PECSYFLKTG DCKFKSNCKY HHPKDRVQKS PQVALSDKGL  420
PLRPDQNICS YYSRYGICKF GPACKFDHSM QLAPSGLEKQ PSMKNCPGED DPRMGRPRTA  480
GEPTAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-120	C3H family protein