PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65495.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family NF-YC
Protein Properties Length: 203aa    MW: 21782.7 Da    PI: 4.8218
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1757.9e-5511024102
       NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 +fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivprd
  OWM65495.1   1 MFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRD 99 
                 5898887789***************************************************************************************** PP

       NF-YC 100 elk 102
                 e+k
  OWM65495.1 100 EIK 102
                 975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MFWSYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFSKA CELFILELTI  60
RSWLHAEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKDEAAAAAA LGVAGVPPAM  120
VGGGMGPTAS GVPYYYPPMG QPAAGPGGMM IGRPAMDPSA VYVQPPSQAW QSVWQTAAAT  180
GDDGTYGAGG VGTNGQGSRD GQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-80NF-YC family protein