PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65900.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 365aa MW: 41174.1 Da PI: 7.0764

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl OWM65900.1 14 RGPWSPEEDAKLKVYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	38.4	2.8e-12	69	112	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G+++W+ Ia+ ++ gRt++++k++w++ OWM65900.1 69 GGFSEEEDNIICSLYISIGSRSWSIIAAQLP-GRTDNDIKNYWNT 112 569**************************.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAKLKVYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FSEEEDNIIC SLYISIGSRS WSIIAAQLPG RTDNDIKNYW NTRLKKKLLG 120 RRKQSNASRF SSTDNQDACS SEDSTHPPAL SSSALERLQL HMQLQRLNSP LSFYNNPALW 180 PKMHPLHEKM INNLQLSSEN LTSYVPDQVQ MNPPSVPNPE HDQNFSSFYG PVIAANAITS 240 LHQESLMKIN DSDKTSPRPK DNGLVTEEML YGNNMQPAVI SSLIHSDHYQ RDGLLGNYCK 300 TSGANSFMSQ ENQQHHQMML DFDYCFKGIL DDSNSWDDSS SADVQAGPGV GIMYQDNYQT 360 SYDNL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGRAPCCDKA NVKRGPWSPE EDAKLKVYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLYISIGSRS WSIIAAQLPG RTDNDIKNYW NTRLKKKLLG  120
RRKQSNASRF SSTDNQDACS SEDSTHPPAL SSSALERLQL HMQLQRLNSP LSFYNNPALW  180
PKMHPLHEKM INNLQLSSEN LTSYVPDQVQ MNPPSVPNPE HDQNFSSFYG PVIAANAITS  240
LHQESLMKIN DSDKTSPRPK DNGLVTEEML YGNNMQPAVI SSLIHSDHYQ RDGLLGNYCK  300
TSGANSFMSQ ENQQHHQMML DFDYCFKGIL DDSNSWDDSS SADVQAGPGV GIMYQDNYQT  360
SYDNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-95	MYB family protein