PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66096.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 381aa    MW: 41847.5 Da    PI: 6.6979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-07128149426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+ f++ G C+ G+ C +aHg
  OWM66096.1 128 AACPEFRK-GSCRKGEACEYAHG 149
                 78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MMIGHPTVEV PPWPLLEDPT DDVYSPFSPQ RSDGGNGTGG GGDLVSALRR FLPSNRPDLL  60
DDDEEGGGGQ EAADSPVDTY SCDHFRMYEF KVRRCTRGRS HDWTECPYAH PGEKARRRDP  120
RKYHYSGAAC PEFRKGSCRK GEACEYAHGV FECWLHPARY RTQPCKDGVN CRRRVCFFAH  180
TPEQLRVITQ QSPRGGGGSS GSDFYEVSPL KQAIEASCAR SLPFLASPSS ISPDDSDSPP  240
LSPMTQSLSR SLGSSSVSDV VASLRNLQLG KVKSLPSSWN SPLGGPNYAS SPRGSMLRSS  300
CFSVPTTPTQ TPNSPGFGYL DLWEKNRFSE EPVMERVESG RNLRARMFER LSKENPLEPG  360
QAKTDESGGA PDVGWVSELV M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-117C3H family protein