PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM66176.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 29242.7 Da PI: 9.8135

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM66176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.9	1.1e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g+lKKA+EL +LCdaev ++ifsstgklye++s OWM66176.1 10 RIDNSTSRQVTFSKRRKGLLKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59 8***********************************************86 PP
2	K-box	81.8	1.5e-27	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++a+ +q+e+a L++++e L++++R+l+G++++ L +k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k +++en +L kk+ OWM66176.1 81 NPLSEAKFWQREAAILREQLEILRENHRQLMGQQITGLGVKDLQNLESQLEMSLRGVRMKKEQILTNEIQELNRKGTIIHQENVELYKKV 170 566788*********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGRGKIAIRR IDNSTSRQVT FSKRRKGLLK KAKELAILCD AEVGLVIFSS TGKLYEFAST 60 SMKSIIQRYN TSKEEHQQIV NPLSEAKFWQ REAAILREQL EILRENHRQL MGQQITGLGV 120 KDLQNLESQL EMSLRGVRMK KEQILTNEIQ ELNRKGTIIH QENVELYKKV NLIRQENIEL 180 YRKVLLCSTQ FLKADMYEHG YMASLRINLM KQLCSTMDNS SANGSTFVPY GLNAREEPHI 240 PIHLQLSQPE HQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-101	MIKC_MADS family protein