PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66208.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25278.6 Da    PI: 5.5151
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n s rqvtfskRr g+lKKAeELSvLCda+v +iifss+ kl+eyss
  OWM66208.1  9 KKIDNASARQVTFSKRRRGLLKKAEELSVLCDADVGLIIFSSSRKLFEYSS 59
                68***********************************************96 PP
2K-box57.27.4e-20911721899
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 + ++a+L ke+++  +++R++ Ge+L+ Ls++eLqqLe+ Le +l +i +kK e ++++i elq+k  +l een++Lr++++
  OWM66208.1  91 NSNYARLSKEVSEKSHQLRQMRGEELQGLSIEELQQLEKSLEAGLGRIIEKKGECIMKEITELQEKGMQLGEENERLRQQVM 172
                 56899***************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAREKIQIKK IDNASARQVT FSKRRRGLLK KAEELSVLCD ADVGLIIFSS SRKLFEYSSS  60
SMKDIIDRHR LHSKNLEKLE QPSLELQLVE NSNYARLSKE VSEKSHQLRQ MRGEELQGLS  120
IEELQQLEKS LEAGLGRIIE KKGECIMKEI TELQEKGMQL GEENERLRQQ VMDISNGRRL  180
VTADSDNLVN YEEGLSSESV TNGCNSTGPP MDYESSDTSL KLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-110MIKC_MADS family protein