PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66254.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22355.8 Da    PI: 10.3297
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.4e-162065146
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                k+ie++  r + fs Rr+ i KKA+EL +LC+ae+ +++fs+tgk 
  OWM66254.1 20 KKIEDDQHRFIMFSSRRAMIYKKASELATLCGAEIGIVVFSPTGKP 65
                68******************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MELAEPNGRK YWGRQKIKIK KIEDDQHRFI MFSSRRAMIY KKASELATLC GAEIGIVVFS  60
PTGKPFSFGI PTIDAVVERF LNRNTSEQPP DDGGMEQMLE AQQRTRIEKI RQNLNKTLAK  120
LEAEKKRDKS LKQLIKTARE PNAPRCEVGW WDAKIEALNP AQLEQVSTSI EQFYGDLMKH  180
MKKRQQLQPQ PQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-33M-type_MADS family protein