PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66255.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 127aa    MW: 14619.8 Da    PI: 9.9419
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.54.1e-0944691944
                HHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF 19 gilKKAeELSvLCdaevaviifsstg 44
                g+ KK +EL +LC+ae+ +++fs+tg
  OWM66255.1 44 GLYKKVSELATLCGAEIGLVMFSPTG 69
                99**********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MEPIKLDGRK CRGHHRMEIK RIENREYRLH MFRIHGIKYL SGDGLYKKVS ELATLCGAEI  60
GLVMFSPTGV PFSIGHPSIE AVLERILNWK NGPQQQIVNG NRGQSILEAR SSNRTQELRE  120
HLNENWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-17M-type_MADS family protein