PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66257.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22106.5 Da    PI: 4.4872
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.3e-112341648
                HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgklye 48
                Rr++i K A+EL +LC ae+ ++ifs+tgk + 
  OWM66257.1  2 RRATIYKQASELATLCCAEIGIVIFSPTGKPFS 34
                9****************************9665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MRRATIYKQA SELATLCCAE IGIVIFSPTG KPFSFGTPSI EVVVERYLKR NLLGKSLDNG  60
DMQTILEADQ TTRIRELREA LNETLSQLEA KRMHGKSLQQ LIKASRAANA TRGEVNWWDA  120
KIRALSTPQL EQASASMEQF YGDLMNHMKQ GNNNNDQNNN NSDNGDVATS TDSLLEAENF  180
DDEVSDFEAG NEASPDEKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-26M-type_MADS family protein