PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66359.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24008 Da    PI: 6.3029
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1949103357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 k+++++++q++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  OWM66359.1  49 KKRKLSAQQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 103
                 56799************************************************95 PP
2HD-ZIP_I/II117.95.8e-3849140293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkr+ls++qv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ y++ + e+++Le+ev +L+e+l++
   OWM66359.1  49 KKRKLSAQQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSLYESTVLEKCHLETEVLKLKEQLSD 140
                  9***************************************************************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MTITMGDQVE SDHVLLISQM FPGTYGPKLR RQRRKKSKGG EASGSGEAKK RKLSAQQVNL  60
LEQNFGNEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEEY SKLKSLYEST  120
VLEKCHLETE VLKLKEQLSD AMKEIQRLST SPSDGGVSSN SPISSSISDV GPPFLGEFGA  180
LEAAVGYDED AALYAIPDEN SYIQSMEWFS QYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12936LRRQRRKK
23352RRKKSKGGEASGSGEAKKRK
33453RRKKSKGGEASGSGEAKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-50HD-ZIP family protein