PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM66663.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 196aa MW: 21556.5 Da PI: 6.8958

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM66663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.7	8.4e-43	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyf ++pkkfa+vhk+FGasnv+k+l++lp ++r da++slvyeA ar+rdPvyG+vg i+ lq+q++ql+ +la++++ OWM66663.1 8 PCASCKLLRRRCAKDCIFAPYFRPDEPKKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVYEASARVRDPVYGCVGAISCLQNQVSQLQLQLAVAQA 106 7**********************************************************************************************9998 PP DUF260 100 e 100 e OWM66663.1 107 E 107 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MAGGSNSPCA SCKLLRRRCA KDCIFAPYFR PDEPKKFAIV HKVFGASNVS KMLQELPVHQ 60 RADAVNSLVY EASARVRDPV YGCVGAISCL QNQVSQLQLQ LAVAQAEILS IQMQQPHQQQ 120 QEQEPSLLLP SPSMLSSLQT DHQDIDDDKS STSLLLSSAA NIINNNQLNL SGQYFGFASS 180 VVNVVQDPLK RESLWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-54	LBD family protein