PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM66778.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

GRAS

Protein Properties

Length: 250aa MW: 29157.2 Da PI: 9.1134

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM66778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	31.4	2.4e-10	125	171	123	167
GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167 ++Wp L+q+L +R++gpp+lRiT ++ pe+ +e+++etg+rLa+ OWM66778.1 125 FHWPILIQKLGERAGGPPKLRITDIELPEHRfcPAERIQETGRRLAD 171 68*************************999***********86 PP
2	GRAS	51.9	1.4e-16	174	247	300	373
GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ceg er+er t+++W+ r ++aGFk++pl+++ +++ ++ l+ + ++++++++++++++gW+dr ++++++W OWM66778.1 174 CEGLERVERPDTYRQWQVRHTRAGFKQLPLDQEFMSKLRHKLKAWYHKEFMLDQDRNWMLFGWRDRIIFATTCW 247 9*******************************************999*********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MDHEREVPGF EYGRATKHSA SHVVKAEEAE LSEMFHKVLL VVAPCSTECC QSTDAGQSKD 60 SRPDPQVRGS NGGREQGSRQ RNKSSVDLRT LLILEARMVG NASWYTRLAT CRPEIGPSIF 120 RRNNFHWPIL IQKLGERAGG PPKLRITDIE LPEHRFCPAE RIQETGRRLA DTWCEGLERV 180 ERPDTYRQWQ VRHTRAGFKQ LPLDQEFMSK LRHKLKAWYH KEFMLDQDRN WMLFGWRDRI 240 IFATTCWVPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	1e-29	GRAS family protein