PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM67229.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family NF-YA
Protein Properties Length: 268aa    MW: 29703.1 Da    PI: 9.1428
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM67229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.57.9e-32131187158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq Rak+e ekkl +k r+pylheSRh hA+rR+Rg+gGrF
  OWM67229.1 131 EEPVYVNAKQYHGILRRRQVRAKAELEKKL-IKVRRPYLHESRHLHAMRRARGCGGRF 187
                 69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MSEKVDTFSS QPWWDEIRHD ATADLLKGSM IDFSSDGNGG LGSKIINLEK TTPHDQSDTR  60
KLAGIDVVSQ PDKLFGSEQQ HRQQASSAFH PTRRSDLVQP SKQELIDHSM PHLHCLGMHS  120
SRAVLPLGVA EEPVYVNAKQ YHGILRRRQV RAKAELEKKL IKVRRPYLHE SRHLHAMRRA  180
RGCGGRFLDT KKLGNGSSAG NASTNPDSRA STEKTGSEQT SFGSLSSESV PFNLSLGEPQ  240
PTGHDQMGFH LFSHHTLSDS RAAELRDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.18e-35NF-YA family protein