PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM67259.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 28454.2 Da PI: 7.6173

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM67259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.9	7.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng++KKA+ELSvLCdaevavi+fs+tgklye+ss OWM67259.1 9 KKIENVNSRQVTFSKRRNGLFKKANELSVLCDAEVAVIVFSNTGKLYEFSS 59 68***********************************************96 PP
2	K-box	55.1	3.3e-19	89	174	14	99
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + q+el+ Lk+ei+ L +l+G +Le Ls+keLqq+e qL ++l ++++kK+ +ll+q+ +++ +e+++ en+aLrk++e OWM67259.1 89 EHRHQTELNVLKSEISRLHMAYSRLIGRELEGLSFKELQQIECQLTEGLLSVKQKKEGFLLDQLGKSRIQEEKATLENEALRKEVE 174 35679******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRGRIEIKK IENVNSRQVT FSKRRNGLFK KANELSVLCD AEVAVIVFSN TGKLYEFSST 60 SMEHTLVRHQ RGLHHELPEN SSDGRVVEEH RHQTELNVLK SEISRLHMAY SRLIGRELEG 120 LSFKELQQIE CQLTEGLLSV KQKKEGFLLD QLGKSRIQEE KATLENEALR KEVEQLKGES 180 QRKALLEFHP LEGKFSLSNP KPIKSCTSDP NEGPDVSLQL NSLATSRGDR KRKAAEMENI 240 ACDDSGSQVA SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	3e-62	MIKC_MADS family protein