PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM67480.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 588aa MW: 65025 Da PI: 6.4109

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM67480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	1e-06	334	355	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H OWM67480.1 334 FCTICGKGFKRDANLRMHMRGH 355 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MYAPMLLMPW NGQMFWSLCF YQGLFLNLQL VIESLGCRML ALIYLQMGCC LCYPMEDLKM 60 DIEERICTEI WPKPSSQNNL AKQVNQTQPS FSNFGLQKDQ SPWEDSSLRD HGVRIGPPFS 120 EYNQASDQIR SSLQSNNSKN SNQDGGVQQT NESLQIGKAQ DWDPRAMLNN LSFLEQKIHQ 180 LQDLVHLIVG RRGQVLGQSD DVVVQQQQLI TADLTSIIVQ LISTAGSLLP SVKHKIAGPN 240 PPPIGHLGQL GGILYNSGVG SNAANAKQSS GGSQKVPDQP NPVDPAGDTD RSYPIEEHDL 300 KEEDDADEGE NLPPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK 360 TPEALAKPNK GNNSETMLLK RYSCPFAGCK RNKDHKKFQP LKTILCVKNH YKRTHCDKSY 420 TCSRCNTKKF SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHITLFQ GHTPAIPLDE 480 NKGAAGPSEQ GETAHGEKSK VAQNISFSFD SGSNNGGGIQ DMIDMKSTID DPSGCFSPLN 540 FDSCSFSGFN DFTRAAFDDS DGGLSFYIPG SCNYDQKNGG QSSCSNLE

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MYAPMLLMPW NGQMFWSLCF YQGLFLNLQL VIESLGCRML ALIYLQMGCC LCYPMEDLKM  60
DIEERICTEI WPKPSSQNNL AKQVNQTQPS FSNFGLQKDQ SPWEDSSLRD HGVRIGPPFS  120
EYNQASDQIR SSLQSNNSKN SNQDGGVQQT NESLQIGKAQ DWDPRAMLNN LSFLEQKIHQ  180
LQDLVHLIVG RRGQVLGQSD DVVVQQQQLI TADLTSIIVQ LISTAGSLLP SVKHKIAGPN  240
PPPIGHLGQL GGILYNSGVG SNAANAKQSS GGSQKVPDQP NPVDPAGDTD RSYPIEEHDL  300
KEEDDADEGE NLPPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK  360
TPEALAKPNK GNNSETMLLK RYSCPFAGCK RNKDHKKFQP LKTILCVKNH YKRTHCDKSY  420
TCSRCNTKKF SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHITLFQ GHTPAIPLDE  480
NKGAAGPSEQ GETAHGEKSK VAQNISFSFD SGSNNGGGIQ DMIDMKSTID DPSGCFSPLN  540
FDSCSFSGFN DFTRAAFDDS DGGLSFYIPG SCNYDQKNGG QSSCSNLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein