PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM67482.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 485aa    MW: 55289.4 Da    PI: 6.5657
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM67482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.21e-91954811373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl  A+av++++ + a + L +l   +s +gd++qR++ yf+ +Laarl+ + s  ++++  ++ts    +ee++a+++++ vsP+++f+h+taN
  OWM67482.1  95 LIHLLLLTATAVDENNVRPALENLGELYRSVSMTGDSVQRVVVYFADGLAARLLTQKSPFFDTIMKKPTS----EEEFSAFTYLYRVSPYYQFAHFTAN 189
                 689****************************************************9*****999999996....89999******************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledle 190
                 qaIlea+e+e     +++H+iDfd+s+G+QWp+++q+L++++ + +  slR+Tg+g     s eel+et++rL  fA+ + ++ fef+ l    l   +
  OWM67482.1 190 QAILEAFEREeghnhRALHVIDFDVSYGFQWPSFIQSLSEKATDWAriSLRVTGFGT----SMEELQETESRLVGFANGFkNLVFEFQGL----LRGSQ 280
                 ********9988887889************************6533359********....*****************98579******8....66677 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 + +Lr k++E++aVnlv++l +l  +s +    ++e+Lk +   +P v+++veqe ++++ sFl rf+e+l+y++a+fdsl+  lp es+er ++E+  
  OWM67482.1 281 IINLRKKKQETVAVNLVFHLNTLN-SSSK----ISETLKSIHAFKPSVLTLVEQEGSRSARSFLSRFMESLHYFAAMFDSLDDCLPMESSERLSIEKNH 374
                 789*****************9996.3333....4569************************************************************** PP

        GRAS 290 lgreivnvvacega.......errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...ee............sgslv.lgWkdr 365
                 lg+ei+ ++   ++       + + + e++e+W+ r+e+ GF+ v++s++  +qaklll+  +++   ++   e+            +g ++ lgW++r
  OWM67482.1 375 LGKEIKWMLNYDKDgdrntdrDNFSKYERMETWKGRMESHGFEGVKMSSRSLMQAKLLLKIRANNYCPLQlegENsnnggfrvierdEGRALsLGWQHR 473
                 *********8654311111113456789*******************************8766443333322311333333333334444445****** PP

        GRAS 366 pLvsvSaW 373
                  L+++SaW
  OWM67482.1 474 CLITASAW 481
                 ******** PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MTEEEEDQLL NLSLAIVSGC GEEARRTKRR RRDGHVFINL NHVDAHGEGG VLEEGKVFAL  60
LQMREEMLNT TTDSSTSKRK APSVDIHEDG KGLHLIHLLL LTATAVDENN VRPALENLGE  120
LYRSVSMTGD SVQRVVVYFA DGLAARLLTQ KSPFFDTIMK KPTSEEEFSA FTYLYRVSPY  180
YQFAHFTANQ AILEAFEREE GHNHRALHVI DFDVSYGFQW PSFIQSLSEK ATDWARISLR  240
VTGFGTSMEE LQETESRLVG FANGFKNLVF EFQGLLRGSQ IINLRKKKQE TVAVNLVFHL  300
NTLNSSSKIS ETLKSIHAFK PSVLTLVEQE GSRSARSFLS RFMESLHYFA AMFDSLDDCL  360
PMESSERLSI EKNHLGKEIK WMLNYDKDGD RNTDRDNFSK YERMETWKGR MESHGFEGVK  420
MSSRSLMQAK LLLKIRANNY CPLQLEGENS NNGGFRVIER DEGRALSLGW QHRCLITASA  480
WHSVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12533RRTKRRRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.13e-55GRAS family protein