PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM67523.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24079.7 Da    PI: 8.9506
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM67523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.3e-25958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ v+ifs +gk+ye +
  OWM67523.1  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIFSAHGKVYELA 58
                68*********************************************965 PP
2K-box66.11.3e-22921839100
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++ a ++  + e++ Lk+eie Lq+ +R + G + + +sl eL  Le++Le  + +iRs+K+++++++i+ l++ke  l+ +nk+L+ k+ee
  OWM67523.1  92 QQRAPSSDAKDEINLLKQEIEVLQKGLRYMFGAGAGAMSLDELDVLEKHLEIWIYHIRSTKMDIMFQEIQLLRNKEGILKAANKYLQDKIEE 183
                 55566678899******************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIFSA HGKVYELATK  60
GTMQGLIDRY MNSSLSGQGA AQSSSSDHVA SQQRAPSSDA KDEINLLKQE IEVLQKGLRY  120
MFGAGAGAMS LDELDVLEKH LEIWIYHIRS TKMDIMFQEI QLLRNKEGIL KAANKYLQDK  180
IEENAAATNF PPMTTNYTNY TYPLTAIQNE LFQY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-79MIKC_MADS family protein