PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM67713.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27061.1 Da    PI: 7.1329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM67713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.6e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +i+n + rqvtfskRr g++KKA+ELSvLCdaevaviifs tgkl+e+s+
  OWM67713.1 10 KIDNVTARQVTFSKRRRGLFKKASELSVLCDAEVAVIIFSATGKLFEFSN 59
                69**********************************************95 PP
2K-box45.33.8e-16951712399
       K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +L ke+ +  +++R++ GedL+ L+l+eL+qLe+ Le +l ++ ++K+e ++++i el kk  +l eenk L++++e
  OWM67713.1  95 RLSKEVAEKTHQLRQMRGEDLQGLNLEELKQLEKMLEAGLHRVLQTKEERIMTEIAELEKKGAKLIEENKVLKHQVE 171
                 5667777777899************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MAREKIKIRK IDNVTARQVT FSKRRRGLFK KASELSVLCD AEVAVIIFSA TGKLFEFSNS  60
SMMDTLERYR IHHYNIEHME TPMLELQLEN SNNIRLSKEV AEKTHQLRQM RGEDLQGLNL  120
EELKQLEKML EAGLHRVLQT KEERIMTEIA ELEKKGAKLI EENKVLKHQV ELYSKGKKPV  180
LVESDTAGAP EEGVLSSAES ATNVCSCSSG PPPDDEGSDI SLKLGYVFSS KIIERKQSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-76MIKC_MADS family protein