PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68086.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9164.66 Da    PI: 10.3636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.2e-26958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtf+kR+ng+l  A+ELS+LCdaeva+i+fs+++kl  +s
  OWM68086.1  9 KRIENKINRQVTFAKRKNGLLQNAYELSILCDAEVALIVFSTRDKLDQFS 58
                79*********************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRKNGLLQ NAYELSILCD AEVALIVFST RDKLDQFSPP  60
PLFHHQASMM QMANFLATSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.38e-31MIKC_MADS family protein