PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68137.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C2H2
Protein Properties Length: 176aa    MW: 19807.6 Da    PI: 4.91
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000643658123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C  C++ F++   L  H++ H
  OWM68137.1 36 YECVFCKQGFTNAQALGGHMNIH 58
                99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MESRRHDLSE ASSDENDPSF KCADETTVLG MSKRSYECVF CKQGFTNAQA LGGHMNIHRK  60
DRARAKQVVA GPSAQPPKHY PIWESPRGYG YPCDDSSYVS GLGFNHQPSA DENYFNYQDM  120
PRAGYSGQTN DEVSYANLSL RIELSQVEEM RSTTRGENDE IDLELRLGQY GRSCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-15C2H2 family protein