PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68139.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C2H2
Protein Properties Length: 228aa    MW: 25362.2 Da    PI: 8.729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68139.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000126587123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  OWM68139.1 65 YSCSFCKREFRSAQALGGHMNVH 87
                99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MERNNSLSKT LKDHCAGNNS SHSHLHHPRL CSSKNPWNNN YGSTHTYGRS EDNYLCGISW  60
PPRSYSCSFC KREFRSAQAL GGHMNVHRRD RARLRQSSPM EDFHQYPVLS LSSTNPSPTS  120
NHKPNPNPYV ASSATPLLIT SCSSMSCPTL APSSALGSLK EVKAADQNLL SSLRSGATES  180
KPKLRSEASI RVQEMGERYK YSNNNMEMDL LSGPNDDYID LELRLGCP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-24C2H2 family protein